For better privacy control, review which applications have requested accessibility access in System Settings and revoke permissions for tools you no longer use.
Take a look:
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While both methods work, dragging files to the Trash and emptying it is generally safer than using immediate delete shortcuts, giving you a chance to recover mistakes.
While both methods hide files, using Terminal commands offers more permanence than simply prefixing a filename with a dot in Finder. Choose the method that matches your intended access level.
Why not test:
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For managing multiple windows efficiently, consider learning the keyboard shortcuts for Mission Control and Split View. They can significantly speed up your workflow compared to manual dragging.